If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 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'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ), 'gf_id' => 'HOM05D000578', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000578' ), 'data_identifier' => 'HOM05D000578', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000578', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '962', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00190' => 'bna', 'A02p20000' => 'bna', 'A02p22250' => 'bna', 'A02p36920' => 'bna', 'A03p17560' => 'bna', 'A04p24310' => 'bna', 'A05p14220' => 'bna', 'A06p48790' => 'bna', 'A07p27510' => 'bna', 'A07p28770' => 'bna', 'A07p41110' => 'bna', 'A07p43870' => 'bna', 'A08p23870' => 'bna', 'A08p23920' => 'bna', 'A08p36160' => 'bna', 'A09p28770' => 'bna', 'A09p67180' => 'bna', 'A10p04660' => 'bna', 'Aa31LG1G8220' => 'aar', 'Aa31LG4G2360' => 'aar', 'Aa31LG4G5770' => 'aar', 'Aa31LG6G16190' => 'aar', 'Aa31LG6G16290' => 'aar', 'Aa31LG7G15180' => 'aar', 'Aa31LG9G11760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2045' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4502' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2140' => 'aag', 'Actinidia00564' => 'ach', 'Actinidia02239' => 'ach', 'Actinidia02244' => 'ach', 'Actinidia04618' => 'ach', 'Actinidia11758' => 'ach', 'Actinidia12603' => 'ach', 'Actinidia20471' => 'ach', 'Actinidia24627' => 'ach', 'Actinidia27858' => 'ach', 'Actinidia27861' => 'ach', 'Actinidia29799' => 'ach', 'Actinidia34592' => 'ach', 'Actinidia39421' => 'ach', 'Ah.01g006450' => 'amhyb', 'Ah.01g018830' => 'amhyb', 'Ah.02g124600' => 'amhyb', 'Ah.02g124610' => 'amhyb', 'Ah.05g171980' => 'amhyb', 'Ah.06g187680' => 'amhyb', 'Ah.07g202220' => 'amhyb', 'Ah.13g072800' => 'amhyb', 'AL1G15990' => 'aly', 'AL2G35520' => 'aly', 'AL2G39000' => 'aly', 'AL4G10460' => 'aly', 'AL4G26630' => 'aly', 'AL6G44070' => 'aly', 'AL7G10860' => 'aly', 'AL7G11000' => 'aly', 'Aqoxy1G01904' => 'aox', 'Aqoxy2G04145' => 'aox', 'Aqoxy5G01480' => 'aox', 'Aqoxy6G02373' => 'aox', 'Aqoxy6G02408' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6JS337' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GBW49T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HNM84L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IJP2R9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM5X49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2A1I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY0P22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6JUAH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1XHAZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U14WQI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U63X74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UU73T8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V574CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2V9C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YFE8EZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3NZLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZT519T' => 'arhy', 'AT1G06040' => 'ath', 'AT1G75540' => 'ath', 'AT1G78600' => 'ath', 'AT2G21320' => 'ath', 'AT2G31380' => 'ath', 'AT4G10240' => 'ath', 'AT4G38960' => 'ath', 'AT4G39070' => 'ath', 'ATR0149G002' => 'atr', 'ATR0584G233' => 'atr', 'ATR0602G117' => 'atr', 'ATR0661G082' => 'atr', 'ATR0743G170' => 'atr', 'ATR1089G082' => 'atr', 'Atru.chr1.3460' => 'acertr', 'Atru.chr13.363' => 'acertr', 'Atru.chr2.1936' => 'acertr', 'Atru.chr2.1973' => 'acertr', 'Atru.chr3.772' => 'acertr', 'Atru.chr4.1242' => 'acertr', 'Atru.chr5.2926' => 'acertr', 'Atru.chr5.3111' => 'acertr', 'Atru.chr5.3141' => 'acertr', 'AUR62002328' => 'cqu', 'AUR62010390' => 'cqu', 'AUR62010415' => 'cqu', 'AUR62014436' => 'cqu', 'AUR62016801' => 'cqu', 'AUR62016828' => 'cqu', 'AUR62019649' => 'cqu', 'AUR62023859' => 'cqu', 'AUR62034563' => 'cqu', 'AUR62039579' => 'cqu', 'BcaB01g01460' => 'bca', 'BcaB01g03979' => 'bca', 'BcaB02g07031' => 'bca', 'BcaB02g07172' => 'bca', 'BcaB02g10084' => 'bca', 'BcaB03g12234' => 'bca', 'BcaB03g12239' => 'bca', 'BcaB03g13440' => 'bca', 'BcaB03g13441' => 'bca', 'BcaB05g24919' => 'bca', 'BcaB05g25147' => 'bca', 'BcaB06g28551' => 'bca', 'BcaB08g34983' => 'bca', 'BcaC01g00267' => 'bca', 'BcaC01g00276' => 'bca', 'BcaC01g05955' => 'bca', 'BcaC02g07980' => 'bca', 'BcaC02g11238' => 'bca', 'BcaC03g15587' => 'bca', 'BcaC03g15826' => 'bca', 'BcaC04g21024' => 'bca', 'BcaC07g36814' => 'bca', 'BcaC07g41156' => 'bca', 'BcaC07g42088' => 'bca', 'BcaC07g42089' => 'bca', 'BcaC08g45415' => 'bca', 'BcaC08g45568' => 'bca', 'BcaC08g47036' => 'bca', 'BcaC08g47339' => 'bca', 'BcaC08g47340' => 'bca', 'BcaC08g47341' => 'bca', 'BcaC08g47342' => 'bca', 'BcaC08g47429' => 'bca', 'BcaNung01283' => 'bca', 'BcaNung01284' => 'bca', 'BcaNung01950' => 'bca', 'BolC1t00035H' => 'bol', 'BolC2t09303H' => 'bol', 'BolC2t09588H' => 'bol', 'BolC3t14455H' => 'bol', 'BolC3t19998H' => 'bol', 'BolC3t20012H' => 'bol', 'BolC4t23425H' => 'bol', 'BolC4t27599H' => 'bol', 'BolC6t38375H' => 'bol', 'BolC6t39992H' => 'bol', 'BolC6t40269H' => 'bol', 'BolC7t46757H' => 'bol', 'BolC8t47028H' => 'bol', 'BolC8t51725H' => 'bol', 'BolC8t52671H' => 'bol', 'BolC9t56488H' => 'bol', 'BraA01t00025Z' => 'bra', 'BraA02t07231Z' => 'bra', 'BraA02t08683Z' => 'bra', 'BraA03t11024Z' => 'bra', 'BraA04t17950Z' => 'bra', 'BraA05t20353Z' => 'bra', 'BraA06t27746Z' => 'bra', 'BraA07t30393Z' => 'bra', 'BraA07t30518Z' => 'bra', 'BraA07t31647Z' => 'bra', 'BraA07t31894Z' => 'bra', 'BraA08t34339Z' => 'bra', 'BraA08t34350Z' => 'bra', 'BraA08t35522Z' => 'bra', 'BraA09t38438Z' => 'bra', 'BraA09t41221Z' => 'bra', 'BraA09t42050Z' => 'bra', 'C01p00290' => 'bna', 'C02p34080' => 'bna', 'C02p35680' => 'bna', 'C03p77430' => 'bna', 'C03p77560' => 'bna', 'C04p18950' => 'bna', 'C04p61140' => 'bna', 'C05p04320' => 'bna', 'C06p30450' => 'bna', 'C06p32530' => 'bna', 'C06p49530' => 'bna', 'C06p52500' => 'bna', 'C07p63450' => 'bna', 'C08p02360' => 'bna', 'C08p41630' => 'bna', 'C08p51450' => 'bna', 'C09p36540' => 'bna', 'CAN.G1222.14' => 'can', 'CAN.G1505.15' => 'can', 'CAN.G170.84' => 'can', 'CAN.G170.98' => 'can', 'CAN.G375.50' => 'can', 'CAN.G594.25' => 'can', 'CAN.G65.163' => 'can', 'CAN.G847.9' => 'can', 'CAN.G851.14' => 'can', 'CANSAT01G0615' => 'cansat', 'CANSAT11G1530' => 'cansat', 'CANSAT11G1758' => 'cansat', 'CANSAT25G1578' => 'cansat', 'CANSAT56G3981' => 'cansat', 'CANSAT78G0136' => 'cansat', 'CARHR005560' => 'chi', 'CARHR068940' => 'chi', 'CARHR072090' => 'chi', 'CARHR112180' => 'chi', 'CARHR125010' => 'chi', 'CARHR247690' => 'chi', 'CARHR247810' => 'chi', 'CARHR256620' => 'chi', 'Carub.0001s0537' => 'cru', 'Carub.0002s2240' => 'cru', 'Carub.0002s2545' => 'cru', 'Carub.0004s0036' => 'cru', 'Carub.0004s1270' => 'cru', 'Carub.0006s2879' => 'cru', 'Carub.0007s0078' => 'cru', 'Carub.0007s0093' => 'cru', 'Ca_01253_v3' => 'car', 'Ca_03930_v3' => 'car', 'Ca_13391_v3' => 'car', 'Ca_15344_v3' => 'car', 'Ca_20794_v3' => 'car', 'Ca_20919_v3' => 'car', 'Ca_24900_v3' => 'car', 'CBR_g25960' => 'cbr', 'CBR_g8223' => 'cbr', 'Cc02_g16940' => 'ccan', 'Cc02_g17070' => 'ccan', 'Cc05_g00200' => 'ccan', 'Cc05_g10720' => 'ccan', 'Cc07_g10470' => 'ccan', 'Cc10_g02140' => 'ccan', 'CDE02G2732' => 'cde', 'CDE02G2836' => 'cde', 'CDE02G3008' => 'cde', 'CDE04G0805' => 'cde', 'CDE04G0869' => 'cde', 'CDE05G2796' => 'cde', 'CDE06G0934' => 'cde', 'CDE06G2048' => 'cde', 'CDE07G0787' => 'cde', 'CDE08G1065' => 'cde', 'CDE09G1223' => 'cde', 'CDE10G0802' => 'cde', 'CDE12G0433' => 'cde', 'Cfa005075' => 'cfa', 'Cfa005101' => 'cfa', 'Cfa006948' => 'cfa', 'Cfa008033' => 'cfa', 'Cfa019515' => 'cfa', 'Cfa021264' => 'cfa', 'Cfa021323' => 'cfa', 'Ciclev10001914m.g' => 'ccl', 'Ciclev10016655m.g' => 'ccl', 'Ciclev10021488m.g' => 'ccl', 'Ciclev10021980m.g' => 'ccl', 'Ciclev10024319m.g' => 'ccl', 'Ciclev10026472m.g' => 'ccl', 'Ciclev10029284m.g' => 'ccl', 'Ciclev10029294m.g' => 'ccl', 'CiPaw.01G098000' => 'cil', 'CiPaw.02G053200' => 'cil', 'CiPaw.03G011400' => 'cil', 'CiPaw.05G071800' => 'cil', 'CiPaw.06G128200' => 'cil', 'CiPaw.06G130800' => 'cil', 'CiPaw.07G056400' => 'cil', 'CiPaw.07G154500' => 'cil', 'CiPaw.08G062500' => 'cil', 'CiPaw.08G135100' => 'cil', 'CiPaw.11G155800' => 'cil', 'CiPaw.12G110700' => 'cil', 'ClCG01G020130' => 'cla', 'ClCG02G004670' => 'cla', 'ClCG06G000940' => 'cla', 'ClCG07G008310' => 'cla', 'ClCG07G010120' => 'cla', 'ClCG08G014540' => 'cla', 'ClCG09G013560' => 'cla', 'ClCG11G004010' => 'cla', 'COL.COLO4_12974' => 'col', 'COL.COLO4_14054' => 'col', 'COL.COLO4_17474' => 'col', 'COL.COLO4_26015' => 'col', 'COL.COLO4_26042' => 'col', 'COL.COLO4_26201' => 'col', 'Cpa.g.sc140.16' => 'cpa', 'Cpa.g.sc150.19' => 'cpa', 'Cpa.g.sc150.42' => 'cpa', 'Cpa.g.sc21.226' => 'cpa', 'Cpa.g.sc6.219' => 'cpa', 'Cpa.g.sc77.61' => 'cpa', 'Cpa.g.sc9.300' => 'cpa', 'CsaV3_2G015160' => 'csa', 'CsaV3_2G029230' => 'csa', 'CsaV3_4G005810' => 'csa', 'CsaV3_4G008210' => 'csa', 'CsaV3_6G006790' => 'csa', 'CsaV3_6G046900' => 'csa', 'CsaV3_7G000270' => 'csa', 'CsaV3_7G006080' => 'csa', 'CSS0010356' => 'camsi', 'CSS0010731' => 'camsi', 'CSS0018768' => 'camsi', 'CSS0027016' => 'camsi', 'CSS0028724' => 'camsi', 'CSS0036169' => 'camsi', 'CSS0037476' => 'camsi', 'CSS0040421' => 'camsi', 'CSS0046793' => 'camsi', 'CSS0048957' => 'camsi', 'CSS0049536' => 'camsi', 'DCAR_003648' => 'dca', 'DCAR_013780' => 'dca', 'DCAR_013847' => 'dca', 'DCAR_017589' => 'dca', 'DCAR_021494' => 'dca', 'DCAR_028444' => 'dca', 'DCAR_028946' => 'dca', 'Dinv13364' => 'din', 'Dinv22751' => 'din', 'Dinv23456' => 'din', 'Dinv23474' => 'din', 'Dinv26708' => 'din', 'Dinv31808' => 'din', 'Dinv39482' => 'din', 'Dinv40063' => 'din', 'Dinv42001' => 'din', 'Dinv42016' => 'din', 'Dinv44178' => 'din', 'Dinv44179' => 'din', 'Duzib041G0183' => 'dzi', 'Duzib052G0774' => 'dzi', 'Duzib093G1942' => 'dzi', 'Duzib116G0709' => 'dzi', 'Duzib132G0058' => 'dzi', 'Duzib147G0457' => 'dzi', 'Duzib151G1043' => 'dzi', 'Duzib187G0552' => 'dzi', 'Duzib213G1040' => 'dzi', 'Duzib248G0852' => 'dzi', 'Duzib264G0769' => 'dzi', 'Duzib268G1026' => 'dzi', 'Duzib268G1205' => 'dzi', 'ECA232G4020' => 'eca', 'ECA233G2668' => 'eca', 'ECA234G4032' => 'eca', 'ECA236G1807' => 'eca', 'ECA236G3912' => 'eca', 'ECA240G2705' => 'eca', 'EL10Ac1g00560' => 'bvu', 'EL10Ac3g05984' => 'bvu', 'EL10Ac4g08416' => 'bvu', 'EL10Ac9g21638' => 'bvu', 'EL10Ac9g21668' => 'bvu', 'Eucgr.A00097' => 'egr', 'Eucgr.F01367' => 'egr', 'Eucgr.F01617' => 'egr', 'Eucgr.G01710' => 'egr', 'Eucgr.H00366' => 'egr', 'Eucgr.I01328' => 'egr', 'Eucgr.I02368' => 'egr', 'FAN05G1878' => 'fan', 'FAN07G0942' => 'fan', 'FAN11G1029' => 'fan', 'FAN12G1676' => 'fan', 'FAN14G1521' => 'fan', 'FAN14G4471' => 'fan', 'FAN15G1202' => 'fan', 'FAN16G1193' => 'fan', 'FAN17G1864' => 'fan', 'FAN19G2480' => 'fan', 'FAN20G1619' => 'fan', 'FAN21G3080' => 'fan', 'FAN23G1112' => 'fan', 'FAN24G2835' => 'fan', 'FAN25G0238' => 'fan', 'FAN26G3156' => 'fan', 'FAN27G1259' => 'fan', 'FAN28G1153' => 'fan', 'FvH4_1g12110' => 'fve', 'FvH4_2g10070' => 'fve', 'FvH4_2g38990' => 'fve', 'FvH4_3g17750' => 'fve', 'FvH4_4g10930' => 'fve', 'FvH4_6g37790' => 'fve', 'Glyma.01G168500' => 'gma', 'Glyma.04G009200' => 'gma', 'Glyma.04G027000' => 'gma', 'Glyma.06G009100' => 'gma', 'Glyma.06G027000' => 'gma', 'Glyma.09G099000' => 'gma', 'Glyma.11G074900' => 'gma', 'Glyma.11G110900' => 'gma', 'Glyma.11G112800' => 'gma', 'Glyma.11G127100' => 'gma', 'Glyma.12G037200' => 'gma', 'Glyma.12G038700' => 'gma', 'Glyma.12G051700' => 'gma', 'Glyma.12G233900' => 'gma', 'Glyma.13G265000' => 'gma', 'Glyma.13G344700' => 'gma', 'Glyma.14G216500' => 'gma', 'Glyma.15G029500' => 'gma', 'Glyma.17G255100' => 'gma', 'Gohir.A01G003548' => 'ghi', 'Gohir.A01G003800' => 'ghi', 'Gohir.A01G047800' => 'ghi', 'Gohir.A02G169200' => 'ghi', 'Gohir.A04G123900' => 'ghi', 'Gohir.A05G188600' => 'ghi', 'Gohir.A06G006200' => 'ghi', 'Gohir.A08G234180' => 'ghi', 'Gohir.A09G211875' => 'ghi', 'Gohir.A10G097600' => 'ghi', 'Gohir.A11G177500' => 'ghi', 'Gohir.A11G289400' => 'ghi', 'Gohir.A12G060900' => 'ghi', 'Gohir.A13G030300' => 'ghi', 'Gohir.A13G031300' => 'ghi', 'Gohir.D01G003300' => 'ghi', 'Gohir.D01G003800' => 'ghi', 'Gohir.D01G038400' => 'ghi', 'Gohir.D02G097100' => 'ghi', 'Gohir.D03G010800' => 'ghi', 'Gohir.D04G166000' => 'ghi', 'Gohir.D05G191700' => 'ghi', 'Gohir.D06G002100' => 'ghi', 'Gohir.D08G254566' => 'ghi', 'Gohir.D09G205300' => 'ghi', 'Gohir.D10G090500' => 'ghi', 'Gohir.D11G185300' => 'ghi', 'Gohir.D11G303000' => 'ghi', 'Gohir.D12G061000' => 'ghi', 'Gohir.D13G028300' => 'ghi', 'Gohir.D13G029300' => 'ghi', 'Gorai.002G004200' => 'gra', 'Gorai.002G004700' => 'gra', 'Gorai.002G047200' => 'gra', 'Gorai.003G011200' => 'gra', 'Gorai.004G271600' => 'gra', 'Gorai.005G110700' => 'gra', 'Gorai.006G229300' => 'gra', 'Gorai.007G196900' => 'gra', 'Gorai.007G331700' => 'gra', 'Gorai.008G064100' => 'gra', 'Gorai.009G197000' => 'gra', 'Gorai.010G006600' => 'gra', 'Gorai.011G099600' => 'gra', 'Gorai.012G154400' => 'gra', 'Gorai.013G032300' => 'gra', 'Gorai.013G033400' => 'gra', 'GSVIVG01009821001' => 'vvi', 'GSVIVG01010794001' => 'vvi', 'GSVIVG01014097001' => 'vvi', 'GSVIVG01018818001' => 'vvi', 'GSVIVG01024173001' => 'vvi', 'GSVIVG01024204001' => 'vvi', 'GSVIVG01037095001' => 'vvi', 'HanXRQChr01g0023841' => 'han', 'HanXRQChr03g0069711' => 'han', 'HanXRQChr04g0127711' => 'han', 'HanXRQChr05g0151311' => 'han', 'HanXRQChr08g0226631' => 'han', 'HanXRQChr09g0262201' => 'han', 'HanXRQChr09g0269441' => 'han', 'HanXRQChr10g0305591' => 'han', 'HanXRQChr10g0305771' => 'han', 'HanXRQChr11g0343681' => 'han', 'HanXRQChr13g0389721' => 'han', 'HanXRQChr14g0439351' => 'han', 'HanXRQChr16g0506391' => 'han', 'HanXRQChr17g0552551' => 'han', 'Haze_01471' => 'cav', 'Haze_02250' => 'cav', 'Haze_02258' => 'cav', 'Haze_02307' => 'cav', 'Haze_03804' => 'cav', 'Haze_09247' => 'cav', 'Haze_14023' => 'cav', 'Haze_22580' => 'cav', 'Hma1.2p1_0050F.1_g028790' => 'hma', 'Hma1.2p1_0066F.1_g035780' => 'hma', 'Hma1.2p1_0066F.1_g035900' => 'hma', 'Hma1.2p1_0851F.1_g228170' => 'hma', 'Hma1.2p1_0851F.1_g228180' => 'hma', 'Hma1.2p1_0886F.1_g232670' => 'hma', 'Hma1.2p1_1244F.1_g270023' => 'hma', 'Hma1.2p1_1386F.1_g279820' => 'hma', 'HPP92_001249' => 'vpl', 'HPP92_001265' => 'vpl', 'HPP92_004545' => 'vpl', 'HPP92_005355' => 'vpl', 'HPP92_007401' => 'vpl', 'HPP92_009874' => 'vpl', 'HPP92_011757' => 'vpl', 'HPP92_015065' => 'vpl', 'HPP92_020999' => 'vpl', 'HPP92_022295' => 'vpl', 'HPP92_022363' => 'vpl', 'HPP92_025421' => 'vpl', 'HPP92_028978' => 'vpl', 'Hund00226' => 'sun', 'Hund03171' => 'sun', 'Hund06266' => 'sun', 'Hund06281' => 'sun', 'Hund10434' => 'sun', 'Hund12016' => 'sun', 'Hund16479' => 'sun', 'Hund17216' => 'sun', 'Hund26870' => 'sun', 'Lalb_Chr01g0002271' => 'lal', 'Lalb_Chr01g0016361' => 'lal', 'Lalb_Chr03g0025411' => 'lal', 'Lalb_Chr03g0026061' => 'lal', 'Lalb_Chr03g0031311' => 'lal', 'Lalb_Chr05g0212461' => 'lal', 'Lalb_Chr07g0192801' => 'lal', 'Lalb_Chr09g0321891' => 'lal', 'Lalb_Chr11g0062071' => 'lal', 'Lalb_Chr14g0369681' => 'lal', 'Lalb_Chr14g0372501' => 'lal', 'Lalb_Chr19g0138351' => 'lal', 'Lalb_Chr19g0138891' => 'lal', 'Lalb_Chr20g0109141' => 'lal', 'Lalb_Chr23g0266301' => 'lal', 'Lalb_Chr24g0396801' => 'lal', 'Lj1A824G61' => 'lonja', 'Lj1g0022045' => 'lja', 'Lj2g0019773' => 'lja', 'Lj3A24T18' => 'lonja', 'Lj3g0014659' => 'lja', 'Lj3g0020526' => 'lja', 'Lj3g0021140' => 'lja', 'Lj3g0023856' => 'lja', 'Lj4C30T2' => 'lonja', 'Lj4C792T3' => 'lonja', 'Lj4g0018284' => 'lja', 'Lj5A190T59' => 'lonja', 'Lj5A191T48' => 'lonja', 'Lj5g0016490' => 'lja', 'Lj6A77T27' => 'lonja', 'Lj8A146G67' => 'lonja', 'Lj9A383T63' => 'lonja', 'Lju337A6T19' => 'lonja', 'Lsat_1_v5_gn_1_77880' => 'lsa', 'Lsat_1_v5_gn_5_125200' => 'lsa', 'Lsat_1_v5_gn_5_126341' => 'lsa', 'Lsat_1_v5_gn_5_26000' => 'lsa', 'Lsat_1_v5_gn_7_101860' => 'lsa', 'Lsat_1_v5_gn_7_92040' => 'lsa', 'Lsat_1_v5_gn_8_128741' => 'lsa', 'Lsat_1_v5_gn_9_100420' => 'lsa', 'Manes.03G085600' => 'mes', 'Manes.04G044000' => 'mes', 'Manes.04G083700' => 'mes', 'Manes.04G085300' => 'mes', 'Manes.05G152700' => 'mes', 'Manes.10G121700' => 'mes', 'Manes.11G082100' => 'mes', 'Manes.11G087900' => 'mes', 'Manes.11G122000' => 'mes', 'Manes.15G067100' => 'mes', 'Manes.15G098000' => 'mes', 'Mapoly0027s0033' => 'mpo', 'Mapoly0064s0079' => 'mpo', 'MBI02_g26483_MAGBIO' => 'mbi', 'MBI05_g10538_MAGBIO' => 'mbi', 'MBI05_g37551_MAGBIO' => 'mbi', 'MBI05_g38490_MAGBIO' => 'mbi', 'MBI06_g17070_MAGBIO' => 'mbi', 'MBI07_g00481_MAGBIO' => 'mbi', 'MBI07_g40300_MAGBIO' => 'mbi', 'MBI09_g45784_MAGBIO' => 'mbi', 'MBI11_g23346_MAGBIO' => 'mbi', 'MBI18_g04582_MAGBIO' => 'mbi', 'MBI18_g21524_MAGBIO' => 'mbi', 'MBI19_g02320_MAGBIO' => 'mbi', 'MCO07G077' => 'mco', 'MCO15G281' => 'mco', 'MD00G1039900' => 'mdo', 'MD02G1110700' => 'mdo', 'MD03G1247700' => 'mdo', 'MD04G1042700' => 'mdo', 'MD08G1021000' => 'mdo', 'MD09G1155900' => 'mdo', 'MD09G1251100' => 'mdo', 'MD10G1063500' => 'mdo', 'MD10G1066000' => 'mdo', 'MD11G1269800' => 'mdo', 'MD15G1018700' => 'mdo', 'MD15G1019000' => 'mdo', 'MD15G1248300' => 'mdo', 'MD17G1243400' => 'mdo', 'Medtr1g023260' => 'mtr', 'Medtr2g073370' => 'mtr', 'Medtr2g099010' => 'mtr', 'Medtr3g113070' => 'mtr', 'Medtr3g117320' => 'mtr', 'Medtr4g067320' => 'mtr', 'Medtr4g071200' => 'mtr', 'Medtr5g021580' => 'mtr', 'MELO3C007886.2' => 'cme', 'MELO3C010985.2' => 'cme', 'MELO3C013430.2' => 'cme', 'MELO3C016115.2' => 'cme', 'MELO3C016370.2' => 'cme', 'MELO3C018684.2' => 'cme', 'MELO3C022445.2' => 'cme', 'MELO3C023341.2' => 'cme', 'Migut.B00176' => 'egut', 'Migut.B00192' => 'egut', 'Migut.C00787' => 'egut', 'Migut.E01637' => 'egut', 'Migut.G01004' => 'egut', 'Migut.H02023' => 'egut', 'Migut.M00693' => 'egut', 'Migut.N03102' => 'egut', 'Migut.N03131' => 'egut', 'MSTRG.1228' => 'ama', 'MSTRG.12861' => 'ama', 'MSTRG.14984' => 'ama', 'MSTRG.16851' => 'ama', 'MSTRG.22322' => 'ama', 'MSTRG.24267' => 'ama', 'MSTRG.24578' => 'ama', 'MSTRG.2511' => 'ama', 'MSTRG.25217' => 'ama', 'MSTRG.3825' => 'ama', 'MSTRG.6689' => 'ama', 'MSTRG.9758' => 'ama', 'Nitab4.5_0000092g0380' => 'nta', 'Nitab4.5_0000192g0010' => 'nta', 'Nitab4.5_0000347g0020' => 'nta', 'Nitab4.5_0000577g0070' => 'nta', 'Nitab4.5_0000587g0070' => 'nta', 'Nitab4.5_0002553g0030' => 'nta', 'Nitab4.5_0002723g0010' => 'nta', 'Nitab4.5_0002723g0100' => 'nta', 'Nitab4.5_0002943g0010' => 'nta', 'Nitab4.5_0003230g0030' => 'nta', 'Nitab4.5_0004983g0040' => 'nta', 'Nitab4.5_0006622g0020' => 'nta', 'Nitab4.5_0011755g0010' => 'nta', 'Nitab4.5_0012115g0010' => 'nta', 'Nitab4.5_0012660g0030' => 'nta', 'Nitab4.5_0012714g0010' => 'nta', 'Nn1g09640' => 'nnu', 'Nn1g09645' => 'nnu', 'Nn3g21445' => 'nnu', 'Nn4g24768' => 'nnu', 'Nn5g27143' => 'nnu', 'Nn5g29192' => 'nnu', 'Nn5g29231' => 'nnu', 'Nn6g32208' => 'nnu', 'Nn6g34424' => 'nnu', 'Oeu004810.1' => 'oeu', 'Oeu010030.1' => 'oeu', 'Oeu018120.1' => 'oeu', 'Oeu020508.1' => 'oeu', 'Oeu020707.1' => 'oeu', 'Oeu021936.3' => 'oeu', 'Oeu025327.2' => 'oeu', 'Oeu030396.1' => 'oeu', 'Oeu046133.1' => 'oeu', 'Oeu047747.1' => 'oeu', 'Oeu058457.1' => 'oeu', 'Os01g0202500' => 'osa', 'Os02g0606200' => 'osa', 'Os02g0646200' => 'osa', 'Os04g0493000' => 'osa', 'Os04g0540200' => 'osa', 'Os05g0204600' => 'osa', 'Os06g0152200' => 'osa', 'Os06g0713000' => 'osa', 'Os09g0527900' => 'osa', 'Os12g0209200' => 'osa', 'Peaxi162Scf00016g00013' => 'pax', 'Peaxi162Scf00016g00238' => 'pax', 'Peaxi162Scf00064g00531' => 'pax', 'Peaxi162Scf00083g01217' => 'pax', 'Peaxi162Scf00111g01322' => 'pax', 'Peaxi162Scf00126g00624' => 'pax', 'Peaxi162Scf00180g00710' => 'pax', 'Peaxi162Scf00287g00115' => 'pax', 'PGR031G0930' => 'pgr', 'PGR042G3210' => 'pgr', 'PGR083G2431' => 'pgr', 'PGR083G2483' => 'pgr', 'PGR083G2656' => 'pgr', 'PGR119G1813' => 'pgr', 'PGR142G2358' => 'pgr', 'PGSC0003DMG400003109' => 'stu', 'PGSC0003DMG400003625' => 'stu', 'PGSC0003DMG400003711' => 'stu', 'PGSC0003DMG400007061' => 'stu', 'PGSC0003DMG400019025' => 'stu', 'PGSC0003DMG400027017' => 'stu', 'PGSC0003DMG400029426' => 'stu', 'PGSC0003DMG400030958' => 'stu', 'Phvul.001G009700' => 'pvu', 'Phvul.002G111400' => 'pvu', 'Phvul.003G260100' => 'pvu', 'Phvul.005G076700' => 'pvu', 'Phvul.005G153500' => 'pvu', 'Phvul.009G004200' => 'pvu', 'Phvul.009G014100' => 'pvu', 'Phvul.011G038900' => 'pvu', 'Phvul.011G040800' => 'pvu', 'Phvul.011G053700' => 'pvu', 'Phvul.011G168500' => 'pvu', 'Potri.001G384000' => 'ptr', 'Potri.002G028200' => 'ptr', 'Potri.004G161000' => 'ptr', 'Potri.004G162600' => 'ptr', 'Potri.005G117100' => 'ptr', 'Potri.005G234500' => 'ptr', 'Potri.007G015200' => 'ptr', 'Potri.007G130100' => 'ptr', 'Potri.009G122000' => 'ptr', 'Potri.009G124400' => 'ptr', 'Potri.011G105400' => 'ptr', 'Potri.017G028300' => 'ptr', 'Potri.017G028301' => 'ptr', 'Pp3c11_20560' => 'ppa', 'Pp3c14_10320' => 'ppa', 'Pp3c17_14230' => 'ppa', 'Pp3c19_1880' => 'ppa', 'Pp3c21_10290' => 'ppa', 'Pp3c22_550' => 'ppa', 'Pp3c7_5280' => 'ppa', 'PRCOL_00000901' => 'pco', 'PRCOL_00001215' => 'pco', 'PRCOL_00006351' => 'pco', 'Prupe.1G197100' => 'ppe', 'Prupe.1G371100' => 'ppe', 'Prupe.3G155900' => 'ppe', 'Prupe.4G156600' => 'ppe', 'Prupe.7G165700' => 'ppe', 'Prupe.8G085000' => 'ppe', 'Prupe.8G087900' => 'ppe', 'Psat2g155840' => 'psa', 'Psat5g004080' => 'psa', 'Psat5g013840' => 'psa', 'Psat5g289520' => 'psa', 'Psat6g005440' => 'psa', 'Psat7g210000' => 'psa', 'PSO170G3255' => 'pso', 'PSO210G7325' => 'pso', 'PSO447G0156' => 'pso', 'PSO541G0141' => 'pso', 'PSO541G1362' => 'pso', 'PSO541G3090' => 'pso', 'PSO675G0984' => 'pso', 'PSO675G3079' => 'pso', 'PSO675G7441' => 'pso', 'PSO675G8010' => 'pso', 'PSO732G0318' => 'pso', 'QL02p010676' => 'qlo', 'QL06p033894' => 'qlo', 'QL08p024210' => 'qlo', 'QL08p043651' => 'qlo', 'QL09p001076' => 'qlo', 'QL10p050508' => 'qlo', 'QL11p045630' => 'qlo', 'QL11p046378' => 'qlo', 'RcHm_v2.0_Chr2g0099771' => 'rch', 'RcHm_v2.0_Chr2g0150861' => 'rch', 'RcHm_v2.0_Chr3g0471561' => 'rch', 'RcHm_v2.0_Chr4g0406441' => 'rch', 'RcHm_v2.0_Chr5g0029541' => 'rch', 'RcHm_v2.0_Chr6g0267001' => 'rch', 'RcHm_v2.0_Chr6g0302091' => 'rch', 'Rhsim02G0081500' => 'rsi', 'Rhsim05G0068400' => 'rsi', 'Rhsim05G0069100' => 'rsi', 'Rhsim06G0026900' => 'rsi', 'Rhsim06G0211700' => 'rsi', 'Rhsim07G0244400' => 'rsi', 'Rhsim09G0024500' => 'rsi', 'Sabra02G0022200' => 'sbr', 'Sabra04G0107700' => 'sbr', 'Sabra04G0109200' => 'sbr', 'Sabra05G0095900' => 'sbr', 'Sabra05G0096000' => 'sbr', 'Sabra05G0180800' => 'sbr', 'Sabra07G0105900' => 'sbr', 'Sabra09G0094200' => 'sbr', 'Sabra09G0095500' => 'sbr', 'Sabra11G0075200' => 'sbr', 'Sabra11G0080700' => 'sbr', 'Sabra17G0017100' => 'sbr', 'SalBow3G0357' => 'sbo', 'SalBow7G1681' => 'sbo', 'SalBow8G1065' => 'sbo', 'SalBow8G2268' => 'sbo', 'SalBow8G5149' => 'sbo', 'Sc03g0003490' => 'sci', 'Sc03g0010700' => 'sci', 'Sc16g0007740' => 'sci', 'Sc18g0005280' => 'sci', 'Sc25g0002600' => 'sci', 'Sed0001238' => 'sed', 'Sed0002194' => 'sed', 'Sed0005096' => 'sed', 'Sed0009293' => 'sed', 'Sed0010735' => 'sed', 'Sed0011509' => 'sed', 'Sed0013847' => 'sed', 'Sed0018531' => 'sed', 'Sed0018705' => 'sed', 'Sed0025476' => 'sed', 'Sed0025591' => 'sed', 'SEGI_07131' => 'sgi', 'SEGI_15918' => 'sgi', 'SEGI_35949' => 'sgi', 'SGA_v2.0_scaffold17G08148' => 'sas', 'SGA_v2.0_scaffold181G39763' => 'sas', 'SGA_v2.0_scaffold19G08730' => 'sas', 'SGA_v2.0_scaffold201G41316' => 'sas', 'SGA_v2.0_scaffold326G48745' => 'sas', 'SGA_v2.0_scaffold32G13201' => 'sas', 'SGA_v2.0_scaffold32G13225' => 'sas', 'SGA_v2.0_scaffold46G17480' => 'sas', 'SGA_v2.0_scaffold73G24385' => 'sas', 'SHI08099' => 'shi', 'SHI08100' => 'shi', 'SMO196G0010' => 'smo', 'SMO201G0154' => 'smo', 'SMO236G0096' => 'smo', 'Solyc01g110180.4' => 'sly', 'Solyc01g110370.4' => 'sly', 'Solyc02g084420.3' => 'sly', 'Solyc02g084430.3' => 'sly', 'Solyc04g081020.3' => 'sly', 'Solyc06g073180.3' => 'sly', 'Solyc07g062160.3' => 'sly', 'Solyc12g005420.2' => 'sly', 'Solyc12g089240.2' => 'sly', 'Sopen01g052340' => 'spe', 'Sopen01g052520' => 'spe', 'Sopen02g029130' => 'spe', 'Sopen04g034630' => 'spe', 'Sopen06g029550' => 'spe', 'Sopen07g030440' => 'spe', 'Sopen12g001390' => 'spe', 'Sopen12g031120' => 'spe', 'Sp1g04850' => 'spa', 'Sp4g00500' => 'spa', 'Sp4g13860' => 'spa', 'Sp5g30670' => 'spa', 'Sp5g33690' => 'spa', 'Sp6g07210' => 'spa', 'Sp7g36770' => 'spa', 'Sp7g36880' => 'spa', 'TAR362G0398' => 'tar', 'TAR381G0097' => 'tar', 'TAR381G1412' => 'tar', 'TAR624G1389' => 'tar', 'TAR625G1199' => 'tar', 'TAR626G1594' => 'tar', 'TAR628G1437' => 'tar', 'TAR636G0494' => 'tar', 'THA.LOC104804114' => 'tha', 'THA.LOC104807770' => 'tha', 'THA.LOC104811400' => 'tha', 'THA.LOC104813806' => 'tha', 'THA.LOC104815661' => 'tha', 'THA.LOC104815856' => 'tha', 'THA.LOC104824792' => 'tha', 'THA.LOC104824799' => 'tha', 'Thecc.01G022500' => 'tca', 'Thecc.02G075400' => 'tca', 'Thecc.02G078000' => 'tca', 'Thecc.04G176700' => 'tca', 'Thecc.07G132800' => 'tca', 'Thecc.08G037200' => 'tca', 'Thhalv10000319m.g' => 'esa', 'Thhalv10008612m.g' => 'esa', 'Thhalv10017169m.g' => 'esa', 'Thhalv10018860m.g' => 'esa', 'Thhalv10018946m.g' => 'esa', 'Thhalv10026133m.g' => 'esa', 'Thhalv10026348m.g' => 'esa', 'Thhalv10029034m.g' => 'esa', 'TPR.G13101' => 'tpr', 'TPR.G16223' => 'tpr', 'TPR.G18858' => 'tpr', 'TPR.G2368' => 'tpr', 'TPR.G31194' => 'tpr', 'TPR.G3199' => 'tpr', 'TPR.G32187' => 'tpr', 'TPR.G32196' => 'tpr', 'TPR.G34204' => 'tpr', 'TWI09G0396' => 'twi', 'TWI12G0221' => 'twi', 'TWI15G0493' => 'twi', 'TWI31G0405' => 'twi', 'TWI36G0362' => 'twi', 'TWI38G0039' => 'twi', 'TWI38G0071' => 'twi', 'TWI39G0909' => 'twi', 'TWI53G2007' => 'twi', 'TWI63G1709' => 'twi', 'TWI73G0396' => 'twi', 'TWI75G1897' => 'twi', 'TWI79G1489' => 'twi', 'unitig_0.g2397' => 'ugi', 'unitig_21.g20154' => 'ugi', 'unitig_37.g12555' => 'ugi', 'unitig_46.g18507' => 'ugi', 'unitig_47.g30751' => 'ugi', 'unitig_52.g17680' => 'ugi', 'unitig_578.g16086' => 'ugi', 'unitig_60.g25438' => 'ugi', 'unitig_744.g24603' => 'ugi', 'unitig_8.g4923' => 'ugi', 'unitig_85.g27428' => 'ugi', 'vmacro00642' => 'vma', 'vmacro04320' => 'vma', 'vmacro11970' => 'vma', 'vmacro17425' => 'vma', 'vmacro17442' => 'vma', 'vmacro21697' => 'vma', 'vmacro22569' => 'vma', 'VMungo0251G0289' => 'vmu', 'VMungo0647G0588' => 'vmu', 'VMungo1080G1414' => 'vmu', 'VMungo1127G0584' => 'vmu', 'VMungo1127G0774' => 'vmu', 'VMungo1127G0983' => 'vmu', 'VMungo1215G3040' => 'vmu', 'VMungo1309G0614' => 'vmu', 'VMungo1309G1761' => 'vmu', 'Zm00001eb075300' => 'zma', 'Zm00001eb078770' => 'zma', 'Zm00001eb103370' => 'zma', 'Zm00001eb120740' => 'zma', 'Zm00001eb184110' => 'zma', 'Zm00001eb186150' => 'zma', 'Zm00001eb227830' => 'zma', 'Zm00001eb246600' => 'zma', 'Zm00001eb248800' => 'zma', 'Zm00001eb270930' => 'zma', 'Zm00001eb272430' => 'zma', 'Zm00001eb283990' => 'zma', 'Zm00001eb319460' => 'zma', 'Zm00001eb347950' => 'zma', 'Zm00001eb376730' => 'zma', 'Zm00001eb427600' => 'zma' ) $gf_id = 'HOM05D000578' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000578' ) $data_identifier = 'HOM05D000578' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 35, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 13, 'amhyb' => (int) 8, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 8, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 10, 'bca' => (int) 36, 'bol' => (int) 16, 'bra' => (int) 17, 'can' => (int) 9, 'cansat' => (int) 6, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 12, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 19, 'ghi' => (int) 31, 'gra' => (int) 16, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 8, 'hma' => (int) 8, 'vpl' => (int) 13, 'sun' => (int) 9, 'lal' => (int) 16, 'lonja' => (int) 10, 'lja' => (int) 8, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 2, 'mbi' => (int) 12, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 11, 'ptr' => (int) 13, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 12, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 9, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1